Introducing the NCBI Pathogen Detection Isolates Browser
Presented March 21, 2018.
In this webinar you will learn how to search for pathogen isolates, identify closely related isolates of interest, and find pathogens encoding particular antimicrobial resistance genes.
The NCBI Pathogen Detection Project was created in collaboration with FDA, CDC, USDA and others to use whole genome sequencing data for foodborne disease surveillance. Pathogens isolated from patients, food and environmental samples, from state, federal, and other labs, are sequenced and the data submitted in real time to NCBI. The Pathogen Detection analysis pipeline assembles the sequences and compares them to other isolates in its database to identify closely related sequences, thereby facilitating identification of cases involved in an outbreak and potential sources of contamination. The Pathogen Detection Isolates Browser is a web-based portal that integrates the genomic sequences, metadata, antibiotic susceptibility and resistance gene information, and SNP cluster information.
https://www.ncbi.nlm.nih.gov/pathogens/
To get video updates, subscribe to the NCBI YouTube channel:
ncbinlm
In this webinar you will learn how to search for pathogen isolates, identify closely related isolates of interest, and find pathogens encoding particular antimicrobial resistance genes.
The NCBI Pathogen Detection Project was created in collaboration with FDA, CDC, USDA and others to use whole genome sequencing data for foodborne disease surveillance. Pathogens isolated from patients, food and environmental samples, from state, federal, and other labs, are sequenced and the data submitted in real time to NCBI. The Pathogen Detection analysis pipeline assembles the sequences and compares them to other isolates in its database to identify closely related sequences, thereby facilitating identification of cases involved in an outbreak and potential sources of contamination. The Pathogen Detection Isolates Browser is a web-based portal that integrates the genomic sequences, metadata, antibiotic susceptibility and resistance gene information, and SNP cluster information.
https://www.ncbi.nlm.nih.gov/pathogens/
To get video updates, subscribe to the NCBI YouTube channel:
ncbinlm
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